Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | Y A absolute (relentless.optimize.Tolerance property) (relentless.optimize.ValueTest property) add() (relentless.model.variable.VariableGraph method) AkimaSpline (class in relentless.math) AllTest (class in relentless.optimize) AnalysisOperation (class in relentless.simulate) AndTest (class in relentless.optimize) anneal (relentless.simulate.BerendsenThermostat property) (relentless.simulate.NoseHooverThermostat property) (relentless.simulate.Thermostat property) AnyTest (class in relentless.optimize) Area (class in relentless.model) ArithmeticMean (class in relentless.model) as_array() (relentless.model.Cube method) (relentless.model.Cuboid method) (relentless.model.ObliqueArea method) (relentless.model.Rectangle method) (relentless.model.Square method) (relentless.model.TriclinicBox method) at_high() (relentless.model.IndependentVariable method) at_low() (relentless.model.IndependentVariable method) B backend (relentless.simulate.SimulationInstance attribute) Barostat (class in relentless.simulate) barrier() (relentless.mpi.Communicator method) bcast() (relentless.mpi.Communicator method) bcast_numpy() (relentless.mpi.Communicator method) BerendsenBarostat (class in relentless.simulate) BerendsenThermostat (class in relentless.simulate) C cast() (relentless.data.Directory class method) check_variables_and_types() (relentless.model.variable.VariableGraph method) clear() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) clear_contents() (relentless.data.Directory method) coeff (relentless.model.potential.Depletion attribute) (relentless.model.potential.LennardJones attribute) (relentless.model.potential.PairPotential attribute) (relentless.model.potential.Yukawa attribute) comm (relentless.mpi.Communicator property) Communicator (class in relentless.mpi) compute() (relentless.model.ArithmeticMean method) (relentless.model.DependentVariable method) (relentless.model.GeometricMean method) (relentless.model.potential.Depletion.Cutoff method) (relentless.optimize.ObjectiveFunction method) (relentless.optimize.RelativeEntropy method) compute_derivative() (relentless.model.ArithmeticMean method) (relentless.model.DependentVariable method) (relentless.model.GeometricMean method) (relentless.model.potential.Depletion.Cutoff method) compute_gradient() (relentless.optimize.RelativeEntropy method) Constant (class in relentless.model) constants (relentless.model.variable.VariableGraph property) converged() (relentless.optimize.AllTest method) (relentless.optimize.AndTest method) (relentless.optimize.AnyTest method) (relentless.optimize.ConvergenceTest method) (relentless.optimize.GradientTest method) (relentless.optimize.LogicTest method) (relentless.optimize.OrTest method) (relentless.optimize.ValueTest method) ConvergenceTest (class in relentless.optimize) coordinate_to_fraction() (relentless.model.Cube method) (relentless.model.Cuboid method) (relentless.model.ObliqueArea method) (relentless.model.Rectangle method) (relentless.model.Square method) (relentless.model.TriclinicBox method) copy() (relentless.model.Ensemble method) copy_contents() (relentless.data.Directory method) Cube (class in relentless.model) Cuboid (class in relentless.model) D default (relentless.collections.DefaultDict property) DefaultDict (class in relentless.collections) dependent_variables (relentless.model.variable.VariableGraph property) DependentVariable (class in relentless.model) Depletion (class in relentless.model.potential) Depletion.Cutoff (class in relentless.model.potential) derivative() (relentless.math.AkimaSpline method) (relentless.math.Interpolator method) (relentless.model.ArithmeticMean method) (relentless.model.DependentVariable method) (relentless.model.GeometricMean method) (relentless.model.potential.Depletion method) (relentless.model.potential.Depletion.Cutoff method) (relentless.model.potential.LennardJones method) (relentless.model.potential.PairPotential method) (relentless.model.potential.PairSpline method) (relentless.model.potential.Potential method) (relentless.model.potential.Yukawa method) (relentless.simulate.PairPotentialTabulator method) (relentless.simulate.PotentialTabulator method) descent_amount() (relentless.optimize.FixedStepDescent method) (relentless.optimize.SteepestDescent method) design_variables (relentless.model.potential.PairSpline property) Dilute (class in relentless.simulate) dimension (relentless.simulate.SimulationInstance attribute) Directory (class in relentless.data) directory (relentless.optimize.ObjectiveFunctionResult property) (relentless.simulate.SimulationInstance attribute) directory() (relentless.data.Directory method) domain (relentless.math.AkimaSpline property) (relentless.math.Interpolator property) dot() (relentless.math.KeyedArray method) E enabled (relentless.mpi.Communicator property) energy() (relentless.model.potential.Depletion method) (relentless.model.potential.LennardJones method) (relentless.model.potential.PairPotential method) (relentless.model.potential.PairSpline method) (relentless.model.potential.Potential method) (relentless.model.potential.Yukawa method) (relentless.simulate.PairPotentialTabulator method) (relentless.simulate.PotentialTabulator method) Ensemble (class in relentless.model) EnsembleAverage (class in relentless.simulate) evaluate() (relentless.model.potential.PairParameters method) (relentless.model.potential.Parameters method) (relentless.model.variable.VariableGraph method) evaluate_derivative() (relentless.model.variable.VariableGraph method) Extent (class in relentless.model) extent (relentless.model.Area property) (relentless.model.Cube property) (relentless.model.Cuboid property) (relentless.model.Extent property) (relentless.model.ObliqueArea property) (relentless.model.Rectangle property) (relentless.model.Square property) (relentless.model.TriclinicBox property) (relentless.model.Volume property) F file() (relentless.data.Directory method) filename (relentless.simulate.InitializeFromFile property) find() (relentless.optimize.LineSearch method) FixedKeyDict (class in relentless.collections) FixedStepDescent (class in relentless.optimize) force() (relentless.model.potential.Depletion method) (relentless.model.potential.LennardJones method) (relentless.model.potential.PairPotential method) (relentless.model.potential.PairSpline method) (relentless.model.potential.Potential method) (relentless.model.potential.Yukawa method) (relentless.simulate.PairPotentialTabulator method) (relentless.simulate.PotentialTabulator method) fraction_to_coordinate() (relentless.model.Cube method) (relentless.model.Cuboid method) (relentless.model.ObliqueArea method) (relentless.model.Rectangle method) (relentless.model.Square method) (relentless.model.TriclinicBox method) from_array() (relentless.model.potential.PairSpline method) from_file() (relentless.model.Ensemble class method) (relentless.model.potential.Depletion class method) (relentless.model.potential.LennardJones class method) (relentless.model.potential.PairPotential class method) (relentless.model.potential.PairSpline class method) (relentless.model.potential.Potential class method) (relentless.model.potential.Yukawa class method) from_json() (relentless.model.Area class method) (relentless.model.Cube class method) (relentless.model.Cuboid class method) (relentless.model.Ensemble class method) (relentless.model.Extent class method) (relentless.model.ObliqueArea class method) (relentless.model.potential.Depletion class method) (relentless.model.potential.LennardJones class method) (relentless.model.potential.PairPotential class method) (relentless.model.potential.PairSpline class method) (relentless.model.potential.Potential class method) (relentless.model.potential.Yukawa class method) (relentless.model.Rectangle class method) (relentless.model.Square class method) (relentless.model.TriclinicBox class method) (relentless.model.Volume class method) G GeometricMean (class in relentless.model) get() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) gradient (relentless.optimize.ObjectiveFunctionResult property) GradientTest (class in relentless.optimize) H high (relentless.model.IndependentVariable property) HOOMD (class in relentless.simulate) I id (relentless.model.Variable attribute) independent_variables (relentless.model.variable.VariableGraph property) IndependentVariable (class in relentless.model) InitializeFromFile (class in relentless.simulate) initializer (relentless.simulate.Dilute property) (relentless.simulate.HOOMD property) (relentless.simulate.LAMMPS property) (relentless.simulate.Simulation property) (relentless.simulate.SimulationInstance attribute) InitializeRandomly (class in relentless.simulate) Interpolator (class in relentless.math) is_acyclic (relentless.model.variable.VariableGraph property) is_empty() (relentless.data.Directory method) isclose() (relentless.optimize.Tolerance method) items() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) K kB (relentless.simulate.Potentials attribute) KeyedArray (class in relentless.math) keys() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) knot_params() (relentless.model.potential.PairSpline method) knots() (relentless.model.potential.PairSpline method) L LAMMPS (class in relentless.simulate) LennardJones (class in relentless.model.potential) line_search (relentless.optimize.FixedStepDescent property) (relentless.optimize.SteepestDescent property) linear_space (relentless.simulate.PairPotentialTabulator property) (relentless.simulate.PotentialTabulator property) LineSearch (class in relentless.optimize) load_json() (relentless.mpi.Communicator method) loadtxt() (relentless.mpi.Communicator method) LogicTest (class in relentless.optimize) low (relentless.model.IndependentVariable property) M max_iter (relentless.optimize.FixedStepDescent property) (relentless.optimize.LineSearch property) (relentless.optimize.SteepestDescent property) MinimizeEnergy (class in relentless.simulate) mode (relentless.model.potential.PairSpline property) module relentless.collections relentless.data relentless.math relentless.model relentless.model.potential relentless.mpi relentless.optimize relentless.simulate move_contents() (relentless.data.Directory method) MTKBarostat (class in relentless.simulate) N N (relentless.model.Ensemble property) name (relentless.model.Variable attribute) neighbor_buffer (relentless.simulate.PairPotentialTabulator property) norm() (relentless.math.KeyedArray method) NoseHooverThermostat (class in relentless.simulate) num (relentless.simulate.PairPotentialTabulator property) (relentless.simulate.PotentialTabulator property) num_knots (relentless.model.potential.PairSpline property) O ObjectiveFunction (class in relentless.optimize) ObjectiveFunctionResult (class in relentless.optimize) ObliqueArea (class in relentless.model) operations (relentless.simulate.Dilute property) (relentless.simulate.HOOMD property) (relentless.simulate.LAMMPS property) (relentless.simulate.Simulation property) optimize() (relentless.optimize.FixedStepDescent method) (relentless.optimize.Optimizer method) (relentless.optimize.SteepestDescent method) Optimizer (class in relentless.optimize) OrTest (class in relentless.optimize) P P (relentless.model.Ensemble property) pair (relentless.simulate.Potentials property) PairMatrix (class in relentless.collections) PairParameters (class in relentless.model.potential) PairPotential (class in relentless.model.potential) PairPotentialTabulator (class in relentless.simulate) pairs (relentless.simulate.SimulationInstance property) PairSpline (class in relentless.model.potential) pairwise_energy_and_force() (relentless.simulate.PairPotentialTabulator method) Parameters (class in relentless.model.potential) params (relentless.model.ArithmeticMean property) (relentless.model.DependentVariable property) (relentless.model.GeometricMean property) (relentless.model.potential.Depletion.Cutoff property) path (relentless.data.Directory property) pop() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) popitem() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) Potential (class in relentless.model.potential) Potentials (class in relentless.simulate) potentials (relentless.simulate.PairPotentialTabulator property) (relentless.simulate.PotentialTabulator property) (relentless.simulate.SimulationInstance attribute) PotentialTabulator (class in relentless.simulate) R rank (relentless.mpi.Communicator property) rank_is_root (relentless.mpi.Communicator property) RDF (class in relentless.model) rdf (relentless.model.Ensemble property) Record (class in relentless.simulate) Rectangle (class in relentless.model) relative (relentless.optimize.Tolerance property) (relentless.optimize.ValueTest property) RelativeEntropy (class in relentless.optimize) relentless.collections module relentless.data module relentless.math module relentless.model module relentless.model.potential module relentless.mpi module relentless.optimize module relentless.simulate module root (relentless.mpi.Communicator property) run() (relentless.simulate.Dilute method) (relentless.simulate.HOOMD method) (relentless.simulate.LAMMPS method) (relentless.simulate.Simulation method) RunBrownianDynamics (class in relentless.simulate) RunLangevinDynamics (class in relentless.simulate) RunMolecularDynamics (class in relentless.simulate) S save() (relentless.model.Ensemble method) (relentless.model.potential.Depletion method) (relentless.model.potential.LennardJones method) (relentless.model.potential.PairPotential method) (relentless.model.potential.PairSpline method) (relentless.model.potential.Potential method) (relentless.model.potential.Yukawa method) (relentless.optimize.ObjectiveFunctionResult method) scale (relentless.optimize.FixedStepDescent property) (relentless.optimize.SteepestDescent property) set_dependencies() (relentless.model.variable.VariableGraph method) setdefault() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) Simulation (class in relentless.simulate) SimulationInstance (class in relentless.simulate) SimulationOperation (class in relentless.simulate) size (relentless.mpi.Communicator property) Square (class in relentless.model) squared_space (relentless.simulate.PairPotentialTabulator property) (relentless.simulate.PotentialTabulator property) start (relentless.simulate.PairPotentialTabulator property) (relentless.simulate.PotentialTabulator property) SteepestDescent (class in relentless.optimize) step_size (relentless.optimize.FixedStepDescent property) (relentless.optimize.SteepestDescent property) stop (relentless.optimize.FixedStepDescent property) (relentless.optimize.Optimizer property) (relentless.optimize.SteepestDescent property) (relentless.simulate.PairPotentialTabulator property) (relentless.simulate.PotentialTabulator property) T T (relentless.model.Ensemble property) (relentless.simulate.BerendsenThermostat property) (relentless.simulate.NoseHooverThermostat property) (relentless.simulate.Thermostat property) table (relentless.math.AkimaSpline property) (relentless.math.Interpolator property) target (relentless.optimize.RelativeEntropy property) temporary_file() (relentless.data.Directory method) Thermostat (class in relentless.simulate) to_json() (relentless.model.Area method) (relentless.model.Cube method) (relentless.model.Cuboid method) (relentless.model.Ensemble method) (relentless.model.Extent method) (relentless.model.ObliqueArea method) (relentless.model.potential.Depletion method) (relentless.model.potential.LennardJones method) (relentless.model.potential.PairParameters method) (relentless.model.potential.PairPotential method) (relentless.model.potential.PairSpline method) (relentless.model.potential.Parameters method) (relentless.model.potential.Potential method) (relentless.model.potential.Yukawa method) (relentless.model.Rectangle method) (relentless.model.Square method) (relentless.model.TriclinicBox method) (relentless.model.Volume method) Tolerance (class in relentless.optimize) tolerance (relentless.optimize.GradientTest property) (relentless.optimize.LineSearch property) TriclinicBox (class in relentless.model) types (relentless.model.Ensemble property) (relentless.simulate.SimulationInstance property) U update() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) (relentless.model.variable.VariableGraph method) V V (relentless.model.Ensemble property) value (relentless.model.ArithmeticMean property) (relentless.model.Constant property) (relentless.model.DependentVariable property) (relentless.model.GeometricMean property) (relentless.model.IndependentVariable property) (relentless.model.potential.Depletion.Cutoff property) (relentless.model.Variable property) (relentless.optimize.ObjectiveFunctionResult property) (relentless.optimize.ValueTest property) values() (relentless.collections.DefaultDict method) (relentless.collections.FixedKeyDict method) (relentless.collections.PairMatrix method) (relentless.math.KeyedArray method) ValueTest (class in relentless.optimize) Variable (class in relentless.model) VariableGraph (class in relentless.model.variable) variables (relentless.model.variable.VariableGraph property) (relentless.optimize.ObjectiveFunctionResult property) Volume (class in relentless.model) W wrap() (relentless.model.Cube method) (relentless.model.Cuboid method) (relentless.model.ObliqueArea method) (relentless.model.Rectangle method) (relentless.model.Square method) (relentless.model.TriclinicBox method) WriteTrajectory (class in relentless.simulate) Y Yukawa (class in relentless.model.potential)